MGYG000308829

Taxonomy

Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens

Cluster representative

MGYG000318566

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318566 on MGnify
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Annotations

MGYG000308829’s cluster representative genome MGYG000318566 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318566 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308829 Copy API Endpoint

MGYG000308829’s cluster representative (MGYG000318566) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318566’s sequence. Because MGYG000308829 has been clustered with MGYG000318566 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308829.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318566

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025251	SAMEA112905290	Control
1.00	SAMEA7697601	SAMEA112905311	Prebiotic
1.00	SAMEA9449923	SAMEA112904816	Probiotic
1.00	SAMEA10455479	SAMEA112904776	Prebiotic
1.00	SAMEA10104961	SAMEA112904891	Probiotic
1.00	SAMEA10145587	SAMEA112905124	Control
1.00	SAMEA9449854	SAMEA112905061	Prebiotic
1.00	SAMEA7025240	SAMEA112904911	Probiotic
1.00	SAMEA7722476	SAMEA112904871	Control
0.99	SAMEA7697599	SAMEA112904961	Control