HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308803

Details for MGYG000308803, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Phocaeicola merdavium Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Phocaeicola > Phocaeicola merdavium
Cluster representative

MGYG000317304

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317304 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308803’s cluster representative genome MGYG000317304 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317304 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308803 Copy API Endpoint
Samples containing this genome

MGYG000308803’s cluster representative (MGYG000317304) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317304’s sequence. Because MGYG000308803 has been clustered with MGYG000317304 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308803.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317304

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025289 Control
1.00 SAMEA10145589 Control
1.00 SAMEA10105072 Prebiotic
1.00 SAMEA10105073 Prebiotic
1.00 SAMEA9449920 Probiotic
1.00 SAMEA7025270 Probiotic
1.00 SAMEA7697608 Control
1.00 SAMEA10105061 Control
1.00 SAMEA10105052 Control
0.98 SAMEA7571870 Prebiotic