HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308642

Details for MGYG000308642, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gastranaerophilaceae Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > Gastranaerophilaceae
Cluster representative

MGYG000308816

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308816 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308642’s cluster representative genome MGYG000308816 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308816 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308642 Copy API Endpoint
Samples containing this genome

MGYG000308642’s cluster representative (MGYG000308816) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308816’s sequence. Because MGYG000308642 has been clustered with MGYG000308816 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308642.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308816

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025283 Control
0.99 SAMEA7697613 Prebiotic
0.97 SAMEA7025273 Prebiotic
0.97 SAMEA10145587 Control
0.96 SAMEA9449932 Prebiotic
0.96 SAMEA7697608 Control
0.95 SAMEA9449923 Probiotic
0.92 SAMEA7025281 Probiotic
0.74 SAMEA7571864 Probiotic
0.39 SAMEA10130076 Prebiotic