HoloFood Data Portal

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MGYG000308638

Details for MGYG000308638, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
An181 sp002160325 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > An181 > An181 sp002160325
Cluster representative

MGYG000310497

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310497 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308638’s cluster representative genome MGYG000310497 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310497 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308638 Copy API Endpoint
Samples containing this genome

MGYG000308638’s cluster representative (MGYG000310497) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310497’s sequence. Because MGYG000308638 has been clustered with MGYG000310497 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308638.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310497

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Containment Sample accession Animal accession Treatment
0.24 SAMEA7025247 Probiotic
0.23 SAMEA10104990 Prebiotic
0.23 SAMEA10159259 Prebiotic
0.23 SAMEA10105058 Control
0.23 SAMEA9449877 Control
0.23 SAMEA7571844 Control
0.23 SAMEA7697623 Probiotic
0.23 SAMEA10104996 Prebiotic
0.23 SAMEA9449905 Prebiotic
0.22 SAMEA10159244 Probiotic