HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308623

Details for MGYG000308623, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Scybalocola faecipullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Scybalocola > Scybalocola faecipullorum
Cluster representative

MGYG000320406

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320406 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308623’s cluster representative genome MGYG000320406 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320406 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308623 Copy API Endpoint
Samples containing this genome

MGYG000308623’s cluster representative (MGYG000320406) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320406’s sequence. Because MGYG000308623 has been clustered with MGYG000320406 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308623.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320406

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Containment Sample accession Animal accession Treatment
0.24 SAMEA10104918 Probiotic
0.24 SAMEA7571872 Prebiotic
0.24 SAMEA10104953 Prebiotic
0.24 SAMEA9449836 Probiotic
0.23 SAMEA7571870 Prebiotic
0.23 SAMEA7697586 Prebiotic
0.23 SAMEA7697590 Control
0.23 SAMEA10145589 Control
0.23 SAMEA7025280 Probiotic
0.23 SAMEA7571858 Probiotic