MGYG000308560

Taxonomy

Phocaeicola sp900066445 Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Bacteroidaceae > Phocaeicola > Phocaeicola sp900066445

Cluster representative

MGYG000319294

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319294 on MGnify
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Annotations

MGYG000308560’s cluster representative genome MGYG000319294 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319294 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308560 Copy API Endpoint

MGYG000308560’s cluster representative (MGYG000319294) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319294’s sequence. Because MGYG000308560 has been clustered with MGYG000319294 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308560.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319294

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Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA7571827	SAMEA112905382	Probiotic
0.21	SAMEA10105065	SAMEA112904742	Prebiotic
0.21	SAMEA10105048	SAMEA112905111	Control
0.20	SAMEA10105037	SAMEA112904745	Probiotic