HoloFood Data Portal

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MGYG000308499

Details for MGYG000308499, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coproplasma stercoravium Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Coproplasma > Coproplasma stercoravium
Cluster representative

MGYG000313061

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313061 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308499’s cluster representative genome MGYG000313061 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313061 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308499 Copy API Endpoint
Samples containing this genome

MGYG000308499’s cluster representative (MGYG000313061) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313061’s sequence. Because MGYG000308499 has been clustered with MGYG000313061 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308499.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313061

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Containment Sample accession Animal accession Treatment
0.79 SAMEA7571817 Control
0.79 SAMEA10455477 Probiotic
0.79 SAMEA10455502 Probiotic
0.79 SAMEA7571779 Prebiotic
0.79 SAMEA14095989 Prebiotic
0.78 SAMEA10104991 Prebiotic
0.78 SAMEA9449956 Probiotic
0.78 SAMEA10104932 Control
0.78 SAMEA7697599 Control
0.78 SAMEA10105017 Probiotic