MGYG000308462

Taxonomy

Limisoma sp900544305 Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Muribaculaceae > Limisoma > Limisoma sp900544305

Cluster representative

MGYG000313199

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313199 on MGnify
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Annotations

MGYG000308462’s cluster representative genome MGYG000313199 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313199 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308462 Copy API Endpoint

MGYG000308462’s cluster representative (MGYG000313199) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313199’s sequence. Because MGYG000308462 has been clustered with MGYG000313199 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308462.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313199

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025270	SAMEA112904830	Probiotic
1.00	SAMEA7697624	SAMEA112905336	Probiotic
1.00	SAMEA9449916	SAMEA112905127	Probiotic
1.00	SAMEA14099425	SAMEA112905180	Prebiotic
1.00	SAMEA7571872	SAMEA112905318	Prebiotic
1.00	SAMEA9449920	SAMEA112904974	Probiotic
1.00	SAMEA7571870	SAMEA112905255	Prebiotic
1.00	SAMEA7697637	SAMEA112905035	Prebiotic
1.00	SAMEA10105067	SAMEA112905183	Prebiotic
1.00	SAMEA10105065	SAMEA112904742	Prebiotic