marker__name marker__type marker__canonical_url measurement units ENA-CHECKLIST ENA Checklist ERC000052 ENA-FIRST-PUBLIC ENA Checklist 2022-08-02 ENA-LAST-UPDATE ENA Checklist 2022-08-02 External Id ENA Checklist SAMEA14099422 INSDC center alias ENA Checklist UNIVERSITY OF COPENHAGEN INSDC center name ENA Checklist UNIVERSITY OF COPENHAGEN INSDC first public ENA Checklist 2022-08-02T16:47:43Z INSDC last update ENA Checklist 2022-08-02T16:47:43Z INSDC status ENA Checklist public Organism ENA Checklist Gallus gallus SRA accession ENA Checklist ERS11702510 Submitter Id ENA Checklist CB03_16F1a_NTM_rev_metaG adapters ENA Checklist AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;AAGTCGGATCGTAGCCATGTCGTTC collection date ENA Checklist 2019-06-04 common name ENA Checklist NTM caecum content description ENA Checklist main associated run/experiment: ERR9612718/ERX9162941, merged from ERR4303137/ERX4251846 and ERR6785290/ERX6409070 (linked to this sample as well); Chicken meta genome data from Caecum content; animal CB03.16 from cage CB03 with treatment CC geographic location (country and/or sea) ENA Checklist Spain geographic location (latitude) ENA Checklist 41.170047 DD geographic location (longitude) ENA Checklist 1.168491 DD geographic location (region and locality) ENA Checklist El Morell; Tarragona host body site ENA Checklist Caecum content host breed ENA Checklist Cobb host common name ENA Checklist Chicken host diet treatment ENA Checklist Control host disease status ENA Checklist Campylobacter:-;Salmonella:-;Clostridium:- host scientific name ENA Checklist Gallus gallus host sex ENA Checklist male host storage container temperature ENA Checklist 21 °C host subject id ENA Checklist CB03.16 host taxid ENA Checklist 9031 host total mass ENA Checklist 2547.0 g library name ENA Checklist BEMT library selection ENA Checklist PCR nucleic acid extraction ENA Checklist D-rex protocol organism ENA Checklist chicken gut metagenome project ENA Checklist HoloFood project name ENA Checklist HoloFood Chicken -- None targeted metabolomic reference host genome for decontamination ENA Checklist GCF_000002315.6 sample storage buffer ENA Checklist Shield sample storage container ENA Checklist E-matrix 2ml sample storage location ENA Checklist UCPH sample storage temperature ENA Checklist -20 °C sample volume or weight for DNA extraction ENA Checklist 0.2 mL sequencing method ENA Checklist MGISEQ-2000 title ENA Checklist CB03.16F1a trial length ENA Checklist 35 day trial timepoint ENA Checklist 35 day Body site SAMPLE caecum content Experiment SAMPLE metagenomics Index PCR cycles SAMPLE 6 Lab Process ID SAMPLE LPC00301 Organism SAMPLE Chicken Pool SAMPLE MAG05-503 Project SAMPLE HoloFood Raw sequence name SAMPLE F19FTSEUET0172_MICrccR/MAG05/200310_I076_V300038545_L2_CDK153B200227006-503/V300038545_L02_503 Sample code SAMPLE CB03.16F1a Sequencing company SAMPLE BGI ng used for library build SAMPLE 392.4 Treatment code TREATMENT CC Treatment name TREATMENT Control Trial code TRIAL CB Trial description TRIAL Trial 2 Trial end TRIAL 2019-05-19 Trial start TRIAL 2019-04-21