marker__name	marker__type	marker__canonical_url	measurement	units
ENA-CHECKLIST	ENA Checklist		ERC000052	
ENA-FIRST-PUBLIC	ENA Checklist		2023-03-22	
ENA-LAST-UPDATE	ENA Checklist		2023-03-22	
External Id	ENA Checklist		SAMEA13901749	
INSDC center alias	ENA Checklist		UNIVERSITY OF COPENHAGEN	
INSDC center name	ENA Checklist		UNIVERSITY OF COPENHAGEN	
INSDC first public	ENA Checklist		2023-03-22T12:22:36Z	
INSDC last update	ENA Checklist		2023-03-22T12:22:36Z	
INSDC status	ENA Checklist		public	
SRA accession	ENA Checklist		ERS11502198	
Submitter Id	ENA Checklist		CC17_11B1a_RAW_HostT	
adapters	ENA Checklist		AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT	
collection date	ENA Checklist		2019-10-01	
common name	ENA Checklist		chicken	
description	ENA Checklist		Chicken host transcriptome data from Ileum mucosa; animal CC17.11 from cage CC17 with treatment CC; Raw data	
geographic location (country and/or sea)	ENA Checklist		Spain	
geographic location (latitude)	ENA Checklist		41.170047	DD
geographic location (longitude)	ENA Checklist		1.168491	DD
geographic location (region and locality)	ENA Checklist		El Morell; Tarragona	
host body site	ENA Checklist		Ileum mucosa	
host breed	ENA Checklist		Cobb	
host common name	ENA Checklist		Chicken	
host diet treatment	ENA Checklist		Control	
host disease status	ENA Checklist		Campylobacter:+;Salmonella:-;Clostridium:-	
host scientific name	ENA Checklist		Gallus gallus	
host sex	ENA Checklist		male	
host storage container temperature	ENA Checklist		21	°C
host subject id	ENA Checklist		CC17.11	
host taxid	ENA Checklist		9031	
host total mass	ENA Checklist		948.0	g
library name	ENA Checklist		Illumina Ribo-Zero Plus rRNA Depletion Kit + NEB Next Ultra RNA Library Prep Kit	
library selection	ENA Checklist		cDNA	
nucleic acid extraction	ENA Checklist		D-rex protocol	
organism	ENA Checklist		Gallus gallus	
project	ENA Checklist		HoloFood	
project name	ENA Checklist		HoloFood Chicken - Host Transcriptome	
reference host genome for decontamination	ENA Checklist		GCF_000000000.0	
sample storage buffer	ENA Checklist		Shield	
sample storage container	ENA Checklist		E-matrix 2ml	
sample storage location	ENA Checklist		UCPH	
sample storage temperature	ENA Checklist		-20	°C
sample volume or weight for DNA extraction	ENA Checklist		0.2	mL
scientific_name	ENA Checklist		Gallus gallus	
sequencing method	ENA Checklist		Illumina NovaSeq 6000	
title	ENA Checklist		CC17.11B1a_HostT	
trial length	ENA Checklist		35	day
trial timepoint	ENA Checklist		21	day
Body site	SAMPLE		ileum mucosa	
Experiment	SAMPLE		transcriptomics	
Organism	SAMPLE		Chicken	
Project	SAMPLE		HoloFood	
Sample code	SAMPLE		CC17.11B1a	
Treatment code	TREATMENT		CC	
Treatment name	TREATMENT		Control	
Trial code	TRIAL		CC	
Trial description	TRIAL		Trial 3	
Trial end	TRIAL		2019-07-14	
Trial start	TRIAL		2019-06-09