HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112949718: a HoloFood salmon host

Data available for SAMEA112949718


Animal details
System
salmon
Samples
G Has metagenomic data
Has metagenomic data
T Has metatranscriptome data
Has metatranscriptome data
F Has fatty acids data
Has fatty acids data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 5 derived samples
API endpoint
/api/animals/SAMEA112949718 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112949718, stored in BioSamples.

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Sample metadata

Marker Measurement Units
Animal code SB07.19 None
Organism Salmon None
Project HoloFood None
Salmon body length 33.8 cm
Salmon gutted weight 388.2 g
Salmon live weight 444.8 g
Sampling time Day 60 None
Wound NO None

Tank metadata

Marker Measurement Units
Average end weight 458.5 g
Average start weight 218.1 g
End of sampling (No. of fish) 20 None
Feed conversion ratio 0.85 feed mass/fish weight gain
Mid sampling (No. of fish) 5 None
Mortality (No. of fish) 0 None
Standard growth rate 1.56 None
Start of sampling (No. of fish) 180 None
Tank code SB07 None
The thermal growth coefficient 2.74 None
Total end of sampling biomass 9560 g
Total end weight 70147 g
Total mid sampling biomass 1831 g
Total start biomass 39253 g

Treatment metadata

Marker Measurement Units
Analyzed Energy (bomb calorimetry) 21.6 MJ/kg
Analyzed Fat 26.2 None
Analyzed Moisture 6.7 %
Analyzed Protein 43.6 None
Analyzed Yttrium 422 mg/kg
Fish Meal 16.9 %
Fish Oil 10.34 %
Lecithin Soy 1.66 %
Pea Protein 10.1 %
Rapeseed Oil 10.14 %
Sanford Blue Mussel Meal 13.1 %
Soy SPC 9 %
Target Energy (crude) 20.1 MJ/kg
Target Fat 26 None
Target Moisture 6 %
Target Protein (crude) 43.1 %
Treatment code Neptune None
Treatment concentration 13.1% %
Treatment description Sanford Blue Mussel Meal None
Vit + min + AA 5.43 %
Water Change -0.98 %
Wheat 11.16 %
Wheat Gluten 13 %
Yttrium 0.05 %

Treatment Fatty Acids Mg metadata

Marker Measurement Units
Sum 16:1 2.45 mg/g
Sum 18:1 25 mg/g
Sum 20:1 2.2 mg/g
Sum 22:1 1.54 mg/g
Sum EPA+DHA 10.6 mg/g
Sum fatty acids 82.3 mg/g
Sum identified 80.7 mg/g
Sum monounsaturate 31.7 mg/g
Sum n-3 17 mg/g
Sum n-6 15.2 mg/g
Sum polyunsaturated 32.4 mg/g
Sum saturated 16.4 mg/g
Sum unidentified 1.57 mg/g
16:2n-4 0.2 mg/g
16:4n-3 0.33 mg/g
18:1n-11 0.11 mg/g
21:5n-3 0.09 mg/g
22:1n-11 1.27 mg/g
Adrenic acid 22:4n-6 <0.01 mg/g
Alpha-Linolenic acid 18:3n-3 2.94 mg/g
Arachidic acid 20:0 0.22 mg/g
Arachidonic acid 20:4n-6 (ARA) 0.68 mg/g
Behenic acid 22:0 0.1 mg/g
Capric acid 10:0 <0.01 mg/g
Caproic acid 6:0 <0.01 mg/g
Caprylic acid 8:0 <0.01 mg/g
Di-homo-gamma-linolenic acid 20:3n-6 0.24 mg/g
Docosahexaenoic acid 22:6n-3 (DHA) 6.74 mg/g
Docosapentaenoic acid 22:5n-3 (DPA) 1.58 mg/g
Eicosadienoic acid 20:2n-6 1.01 mg/g
Eicosapentaenoic acid 20:5n-3 (EPA) 3.82 mg/g
Eicosatetraenoic acid 20:4n-3 0.67 mg/g
Eicosatrienoic acid 20:3n-3 <0.01 mg/g
Eicosenoic acid 20:1n-9 1.93 mg/g
Erucic acid 22:1n-9 0.27 mg/g
Gadoleic acid 20:1n-11 0.18 mg/g
Gamma-Linolenic acid 18:3n-6 <0.01 mg/g
Hexadecatrienoic acid 16:3n-3 0.1 mg/g
Hypogeic acid 16:1n-9 0.19 mg/g
Lauric acid 12:0 <0.01 mg/g
Lignoceric acid 24:0 <0.01 mg/g
Linoleic acid 18:2n-6 13.16 mg/g
Margaric acid 17:0 0.13 mg/g
Mead acid 20:3n-9 <0.01 mg/g
Myristic acid 14:0 2.08 mg/g
Myristoleic acid 14:1n-9 <0.01 mg/g
Nervonic acid 24:1n-9 0.54 mg/g
Oleic acid 18:1n-9 22.12 mg/g
Osbond acid 22:5n-6 0.12 mg/g
Palmitic acid 16:0 10.69 mg/g
Palmitoleic acid 16:1n-7 2.26 mg/g
Paullinic acid 20:1n-7 0.09 mg/g
Pentadecylic acid 15:0 0.19 mg/g
Stearic acid 18:0 2.98 mg/g
Stearidonic acid 18:4n-3 0.47 mg/g
Tetracosahexaenoic acid 24:6n-3 0.12 mg/g
Tetracosapentaenoic acid 24:5n-3 0.14 mg/g
Vaccenic acid 18:1n-7 2.79 mg/g
n-3/n-6 1,0 mg/g
n-6/n-3 1,0 mg/g

Treatment Fatty Acids Percentage metadata

Marker Measurement Units
Sum 16:1 2.45 %
Sum 18:1 25 %
Sum 20:1 2.2 %
Sum 22:1 1.54 %
Sum EPA+DHA 10.6 %
Sum fatty acids 82.3 %
Sum identified 80.7 %
Sum monounsaturate 31.7 %
Sum n-3 17 %
Sum n-6 15.2 %
Sum polyunsaturated 32.4 %
Sum saturated 16.4 %
Sum unidentified 1.57 %
16:2n-4 0.2 %
16:4n-3 0.33 %
18:1n-11 0.11 %
21:5n-3 0.09 %
22:1n-11 1.27 %
Adrenic acid 22:4n-6 <0.01 %
Alpha-Linolenic acid 18:3n-3 2.94 %
Arachidic acid 20:0 0.22 %
Arachidonic acid 20:4n-6 (ARA) 0.68 %
Behenic acid 22:0 0.1 %
Capric acid 10:0 <0.01 %
Caproic acid 6:0 <0.01 %
Caprylic acid 8:0 <0.01 %
Di-homo-gamma-linolenic acid 20:3n-6 0.24 %
Docosahexaenoic acid 22:6n-3 (DHA) 6.74 %
Docosapentaenoic acid 22:5n-3 (DPA) 1.58 %
Eicosadienoic acid 20:2n-6 1.01 %
Eicosapentaenoic acid 20:5n-3 (EPA) 3.82 %
Eicosatetraenoic acid 20:4n-3 0.67 %
Eicosatrienoic acid 20:3n-3 <0.01 %
Eicosenoic acid 20:1n-9 1.93 %
Erucic acid 22:1n-9 0.27 %
Gadoleic acid 20:1n-11 0.18 %
Gamma-Linolenic acid 18:3n-6 <0.01 %
Hexadecatrienoic acid 16:3n-3 0.1 %
Hypogeic acid 16:1n-9 0.19 %
Lauric acid 12:0 <0.01 %
Lignoceric acid 24:0 <0.01 %
Linoleic acid 18:2n-6 13.16 %
Margaric acid 17:0 0.13 %
Mead acid 20:3n-9 <0.01 %
Myristic acid 14:0 2.08 %
Myristoleic acid 14:1n-9 <0.01 %
Nervonic acid 24:1n-9 0.54 %
Oleic acid 18:1n-9 22.12 %
Osbond acid 22:5n-6 0.12 %
Palmitic acid 16:0 10.69 %
Palmitoleic acid 16:1n-7 2.26 %
Paullinic acid 20:1n-7 0.09 %
Pentadecylic acid 15:0 0.19 %
Stearic acid 18:0 2.98 %
Stearidonic acid 18:4n-3 0.47 %
Tetracosahexaenoic acid 24:6n-3 0.12 %
Tetracosapentaenoic acid 24:5n-3 0.14 %
Vaccenic acid 18:1n-7 2.79 %
n-3/n-6 1,0 %
n-6/n-3 1,0 %

Trial metadata

Marker Measurement Units
Environment Tanks (flow-through) None
Trial code SB None
Trial description Trial B: Blue mussel-dose response None
Trial end 2019-11-22 None
Trial start 2019-08-14 None