HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112949231: a HoloFood salmon host

Data available for SAMEA112949231


Animal details
System
salmon
Samples
G Has metagenomic data
Has metagenomic data
T Has metatranscriptome data
Has metatranscriptome data
Has metabolomic data Has metabolomic data
I Has iodine data
Has iodine data
F Has fatty acids data
Has fatty acids data
H Has heavy metals data
Has heavy metal data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 8 derived samples
API endpoint
/api/animals/SAMEA112949231 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112949231, stored in BioSamples.

 Download all as TSV

Sample metadata

Marker Measurement Units
Animal code SA01.26 None
Organism Salmon None
Project HoloFood None
Salmon body length 34 cm
Salmon gutted weight 443.8 g
Salmon live weight 534.4 g
Sampling time Day 60 None
Wound NO None

Tank metadata

Marker Measurement Units
Average end weight 575.7 g
Average start weight 299.7 g
End of sampling (No. of fish) 20 None
Feed conversion ratio 1 feed mass/fish weight gain
Mid sampling (No. of fish) 5 None
Mortality (No. of fish) 0 None
Standard growth rate 1.18 None
Start of sampling (No. of fish) 160 None
Tank code SA01 None
The thermal growth coefficient 2.26 None
Total end of sampling biomass 12081 g
Total end weight 76565 g
Total mid sampling biomass 1947 g
Total start biomass 47944 g

Treatment metadata

Marker Measurement Units
Analyzed Energy (bomb calorimetry) 22.5 MJ/kg
Analyzed Fat 27 None
Analyzed Moisture 5.4 %
Analyzed Protein 42.8 None
Analyzed Yttrium 423 mg/kg
Fish Meal 15 %
Fish Oil 17.8 %
Guar Meal 13 %
Rapeseed Oil 5.2 %
Soy SPC 20.2 %
Target Energy (crude) 23.8 MJ/kg
Target Fat 26.7 None
Target Moisture 6 %
Target Protein (crude) 43.2 %
Treatment code Tiger None
Treatment concentration 0.0% %
Treatment description Fermented algae meal (added in in oil coating) None
Vit + min + AA 4.7 %
Water Change 0.5 %
Wheat 11 %
Wheat Gluten 12.6 %
Yttrium 0.1 %

Treatment Fatty Acids Mg metadata

Marker Measurement Units
Sum 16:1 2.67 mg/g
Sum 18:1 25.9 mg/g
Sum 20:1 3.36 mg/g
Sum 22:1 3.13 mg/g
Sum EPA+DHA 10.6 mg/g
Sum fatty acids 79.8 mg/g
Sum identified 78.1 mg/g
Sum monounsaturate 35.6 mg/g
Sum n-3 16.9 mg/g
Sum n-6 10 mg/g
Sum polyunsaturated 27.1 mg/g
Sum saturated 15.2 mg/g
Sum unidentified 1.7 mg/g
16:2n-4 0.17 mg/g
16:4n-3 0.17 mg/g
18:1n-11 0.26 mg/g
21:5n-3 0.22 mg/g
22:1n-11 2.81 mg/g
Adrenic acid 22:4n-6 <0.01 mg/g
Alpha-Linolenic acid 18:3n-3 2.8 mg/g
Arachidic acid 20:0 0.22 mg/g
Arachidonic acid 20:4n-6 (ARA) 0.56 mg/g
Behenic acid 22:0 0.12 mg/g
Capric acid 10:0 <0.01 mg/g
Caproic acid 6:0 <0.01 mg/g
Caprylic acid 8:0 <0.01 mg/g
Di-homo-gamma-linolenic acid 20:3n-6 0.23 mg/g
Docosahexaenoic acid 22:6n-3 (DHA) 7.91 mg/g
Docosapentaenoic acid 22:5n-3 (DPA) 1.14 mg/g
Eicosadienoic acid 20:2n-6 0.71 mg/g
Eicosapentaenoic acid 20:5n-3 (EPA) 2.68 mg/g
Eicosatetraenoic acid 20:4n-3 0.65 mg/g
Eicosatrienoic acid 20:3n-3 <0.01 mg/g
Eicosenoic acid 20:1n-9 2.98 mg/g
Erucic acid 22:1n-9 0.32 mg/g
Gadoleic acid 20:1n-11 0.28 mg/g
Gamma-Linolenic acid 18:3n-6 0.09 mg/g
Hexadecatrienoic acid 16:3n-3 <0.01 mg/g
Hypogeic acid 16:1n-9 0.26 mg/g
Lauric acid 12:0 <0.01 mg/g
Lignoceric acid 24:0 0.1 mg/g
Linoleic acid 18:2n-6 8.3 mg/g
Margaric acid 17:0 0.18 mg/g
Mead acid 20:3n-9 <0.01 mg/g
Myristic acid 14:0 2.38 mg/g
Myristoleic acid 14:1n-9 0.1 mg/g
Nervonic acid 24:1n-9 0.45 mg/g
Oleic acid 18:1n-9 23.33 mg/g
Osbond acid 22:5n-6 0.14 mg/g
Palmitic acid 16:0 9.82 mg/g
Palmitoleic acid 16:1n-7 2.4 mg/g
Paullinic acid 20:1n-7 0.1 mg/g
Pentadecylic acid 15:0 0.2 mg/g
Stearic acid 18:0 2.2 mg/g
Stearidonic acid 18:4n-3 0.82 mg/g
Tetracosahexaenoic acid 24:6n-3 0.27 mg/g
Tetracosapentaenoic acid 24:5n-3 0.19 mg/g
Vaccenic acid 18:1n-7 2.35 mg/g
n-3/n-6 2,7 mg/g
n-6/n-3 0,4 mg/g

Treatment Fatty Acids Percentage metadata

Marker Measurement Units
Sum 16:1 2.67 %
Sum 18:1 25.9 %
Sum 20:1 3.36 %
Sum 22:1 3.13 %
Sum EPA+DHA 10.6 %
Sum fatty acids 79.8 %
Sum identified 78.1 %
Sum monounsaturate 35.6 %
Sum n-3 16.9 %
Sum n-6 10 %
Sum polyunsaturated 27.1 %
Sum saturated 15.2 %
Sum unidentified 1.7 %
16:2n-4 0.17 %
16:4n-3 0.17 %
18:1n-11 0.26 %
21:5n-3 0.22 %
22:1n-11 2.81 %
Adrenic acid 22:4n-6 <0.01 %
Alpha-Linolenic acid 18:3n-3 2.8 %
Arachidic acid 20:0 0.22 %
Arachidonic acid 20:4n-6 (ARA) 0.56 %
Behenic acid 22:0 0.12 %
Capric acid 10:0 <0.01 %
Caproic acid 6:0 <0.01 %
Caprylic acid 8:0 <0.01 %
Di-homo-gamma-linolenic acid 20:3n-6 0.23 %
Docosahexaenoic acid 22:6n-3 (DHA) 7.91 %
Docosapentaenoic acid 22:5n-3 (DPA) 1.14 %
Eicosadienoic acid 20:2n-6 0.71 %
Eicosapentaenoic acid 20:5n-3 (EPA) 2.68 %
Eicosatetraenoic acid 20:4n-3 0.65 %
Eicosatrienoic acid 20:3n-3 <0.01 %
Eicosenoic acid 20:1n-9 2.98 %
Erucic acid 22:1n-9 0.32 %
Gadoleic acid 20:1n-11 0.28 %
Gamma-Linolenic acid 18:3n-6 0.09 %
Hexadecatrienoic acid 16:3n-3 <0.01 %
Hypogeic acid 16:1n-9 0.26 %
Lauric acid 12:0 <0.01 %
Lignoceric acid 24:0 0.1 %
Linoleic acid 18:2n-6 8.3 %
Margaric acid 17:0 0.18 %
Mead acid 20:3n-9 <0.01 %
Myristic acid 14:0 2.38 %
Myristoleic acid 14:1n-9 0.1 %
Nervonic acid 24:1n-9 0.45 %
Oleic acid 18:1n-9 23.33 %
Osbond acid 22:5n-6 0.14 %
Palmitic acid 16:0 9.82 %
Palmitoleic acid 16:1n-7 2.4 %
Paullinic acid 20:1n-7 0.1 %
Pentadecylic acid 15:0 0.2 %
Stearic acid 18:0 2.2 %
Stearidonic acid 18:4n-3 0.82 %
Tetracosahexaenoic acid 24:6n-3 0.27 %
Tetracosapentaenoic acid 24:5n-3 0.19 %
Vaccenic acid 18:1n-7 2.35 %
n-3/n-6 2,7 %
n-6/n-3 0,4 %

Trial metadata

Marker Measurement Units
Environment Tanks (flow-through) None
Trial code SA None
Trial description Trial A: Seaweed-dose response None
Trial end 2019-08-13 None
Trial start 2019-06-11 None