HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112948918: a HoloFood salmon host

Data available for SAMEA112948918


Animal details
System
salmon
Samples
G Has metagenomic data
Has metagenomic data
T Has metatranscriptome data
Has metatranscriptome data
Has metabolomic data Has metabolomic data
I Has iodine data
Has iodine data
F Has fatty acids data
Has fatty acids data
H Has heavy metals data
Has heavy metal data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 9 derived samples
API endpoint
/api/animals/SAMEA112948918 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112948918, stored in BioSamples.

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Sample metadata

Marker Measurement Units
Animal code SA09.04 None
Organism Salmon None
Project HoloFood None
Salmon body length 29 cm
Salmon gutted weight 278.4 g
Salmon live weight 332 g
Sampling time Day 0 None
Wound NO None

Tank metadata

Marker Measurement Units
Average end weight 556.5 g
Average start weight 299 g
End of sampling (No. of fish) 30 None
Feed conversion ratio 1 feed mass/fish weight gain
Mid sampling (No. of fish) 5 None
Mortality (No. of fish) 0 None
Standard growth rate 1.09 None
Start of sampling (No. of fish) 160 None
Tank code SA09 None
The thermal growth coefficient 2.07 None
Total end of sampling biomass 17638 g
Total end weight 69002 g
Total mid sampling biomass 1685 g
Total start biomass 47840 g

Treatment metadata

Marker Measurement Units
Analyzed Energy (bomb calorimetry) 22.47 MJ/kg
Analyzed Fat 26.1 None
Analyzed Moisture 5.4 %
Analyzed Protein 43.2 None
Analyzed Yttrium 448 mg/kg
Fish Meal 14.9 %
Fish Oil 17.7 %
Guar Meal 12.9 %
Rapeseed Oil 5.1 %
Soy SPC 20.1 %
Target Energy (crude) 23.7 MJ/kg
Target Fat 26.4 None
Target Moisture 6 %
Target Protein (crude) 43 %
Treatment code Puma None
Treatment concentration 0.5% %
Treatment description Fermented algae meal (added in in oil coating) None
Vit + min + AA 4.7 %
Water Change 0.5 %
Wheat 10.9 %
Wheat Gluten 12.5 %
Yttrium 0.1 %

Treatment Fatty Acids Mg metadata

Marker Measurement Units
Sum 16:1 1.15 mg/g
Sum 18:1 17.6 mg/g
Sum 20:1 1.88 mg/g
Sum 22:1 1.34 mg/g
Sum EPA+DHA 5.56 mg/g
Sum fatty acids 47.4 mg/g
Sum identified 46.6 mg/g
Sum monounsaturate 22.1 mg/g
Sum n-3 9 mg/g
Sum n-6 7.26 mg/g
Sum polyunsaturated 16.4 mg/g
Sum saturated 7.98 mg/g
Sum unidentified 0.762 mg/g
16:2n-4 0.09 mg/g
16:4n-3 <0.01 mg/g
18:1n-11 0.12 mg/g
21:5n-3 0.09 mg/g
22:1n-11 1.07 mg/g
Adrenic acid 22:4n-6 <0.01 mg/g
Alpha-Linolenic acid 18:3n-3 2.03 mg/g
Arachidic acid 20:0 0.12 mg/g
Arachidonic acid 20:4n-6 (ARA) 0.36 mg/g
Behenic acid 22:0 0.07 mg/g
Capric acid 10:0 <0.01 mg/g
Caproic acid 6:0 <0.01 mg/g
Caprylic acid 8:0 <0.01 mg/g
Di-homo-gamma-linolenic acid 20:3n-6 0.17 mg/g
Docosahexaenoic acid 22:6n-3 (DHA) 4.16 mg/g
Docosapentaenoic acid 22:5n-3 (DPA) 0.5 mg/g
Eicosadienoic acid 20:2n-6 0.54 mg/g
Eicosapentaenoic acid 20:5n-3 (EPA) 1.4 mg/g
Eicosatetraenoic acid 20:4n-3 0.33 mg/g
Eicosatrienoic acid 20:3n-3 <0.01 mg/g
Eicosenoic acid 20:1n-9 1.77 mg/g
Erucic acid 22:1n-9 0.27 mg/g
Gadoleic acid 20:1n-11 0.11 mg/g
Gamma-Linolenic acid 18:3n-6 0.06 mg/g
Hexadecatrienoic acid 16:3n-3 <0.01 mg/g
Hypogeic acid 16:1n-9 0.11 mg/g
Lauric acid 12:0 <0.01 mg/g
Lignoceric acid 24:0 <0.01 mg/g
Linoleic acid 18:2n-6 6.06 mg/g
Margaric acid 17:0 0.07 mg/g
Mead acid 20:3n-9 <0.01 mg/g
Myristic acid 14:0 1.02 mg/g
Myristoleic acid 14:1n-9 <0.01 mg/g
Nervonic acid 24:1n-9 0.17 mg/g
Oleic acid 18:1n-9 15.72 mg/g
Osbond acid 22:5n-6 0.06 mg/g
Palmitic acid 16:0 5.18 mg/g
Palmitoleic acid 16:1n-7 1.04 mg/g
Paullinic acid 20:1n-7 <0.01 mg/g
Pentadecylic acid 15:0 0.08 mg/g
Stearic acid 18:0 1.45 mg/g
Stearidonic acid 18:4n-3 0.32 mg/g
Tetracosahexaenoic acid 24:6n-3 0.1 mg/g
Tetracosapentaenoic acid 24:5n-3 0.07 mg/g
Vaccenic acid 18:1n-7 1.75 mg/g
n-3/n-6 2,8 mg/g
n-6/n-3 0,4 mg/g

Treatment Fatty Acids Percentage metadata

Marker Measurement Units
Sum 16:1 1.15 %
Sum 18:1 17.6 %
Sum 20:1 1.88 %
Sum 22:1 1.34 %
Sum EPA+DHA 5.56 %
Sum fatty acids 47.4 %
Sum identified 46.6 %
Sum monounsaturate 22.1 %
Sum n-3 9 %
Sum n-6 7.26 %
Sum polyunsaturated 16.4 %
Sum saturated 7.98 %
Sum unidentified 0.762 %
16:2n-4 0.09 %
16:4n-3 <0.01 %
18:1n-11 0.12 %
21:5n-3 0.09 %
22:1n-11 1.07 %
Adrenic acid 22:4n-6 <0.01 %
Alpha-Linolenic acid 18:3n-3 2.03 %
Arachidic acid 20:0 0.12 %
Arachidonic acid 20:4n-6 (ARA) 0.36 %
Behenic acid 22:0 0.07 %
Capric acid 10:0 <0.01 %
Caproic acid 6:0 <0.01 %
Caprylic acid 8:0 <0.01 %
Di-homo-gamma-linolenic acid 20:3n-6 0.17 %
Docosahexaenoic acid 22:6n-3 (DHA) 4.16 %
Docosapentaenoic acid 22:5n-3 (DPA) 0.5 %
Eicosadienoic acid 20:2n-6 0.54 %
Eicosapentaenoic acid 20:5n-3 (EPA) 1.4 %
Eicosatetraenoic acid 20:4n-3 0.33 %
Eicosatrienoic acid 20:3n-3 <0.01 %
Eicosenoic acid 20:1n-9 1.77 %
Erucic acid 22:1n-9 0.27 %
Gadoleic acid 20:1n-11 0.11 %
Gamma-Linolenic acid 18:3n-6 0.06 %
Hexadecatrienoic acid 16:3n-3 <0.01 %
Hypogeic acid 16:1n-9 0.11 %
Lauric acid 12:0 <0.01 %
Lignoceric acid 24:0 <0.01 %
Linoleic acid 18:2n-6 6.06 %
Margaric acid 17:0 0.07 %
Mead acid 20:3n-9 <0.01 %
Myristic acid 14:0 1.02 %
Myristoleic acid 14:1n-9 <0.01 %
Nervonic acid 24:1n-9 0.17 %
Oleic acid 18:1n-9 15.72 %
Osbond acid 22:5n-6 0.06 %
Palmitic acid 16:0 5.18 %
Palmitoleic acid 16:1n-7 1.04 %
Paullinic acid 20:1n-7 <0.01 %
Pentadecylic acid 15:0 0.08 %
Stearic acid 18:0 1.45 %
Stearidonic acid 18:4n-3 0.32 %
Tetracosahexaenoic acid 24:6n-3 0.1 %
Tetracosapentaenoic acid 24:5n-3 0.07 %
Vaccenic acid 18:1n-7 1.75 %
n-3/n-6 2,8 %
n-6/n-3 0,4 %

Trial metadata

Marker Measurement Units
Environment Tanks (flow-through) None
Trial code SA None
Trial description Trial A: Seaweed-dose response None
Trial end 2019-08-13 None
Trial start 2019-06-11 None