HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905161: a HoloFood chicken host

Data available for SAMEA112905161


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has host genomic data Has host genomic data
View 6 derived samples
API endpoint
/api/animals/SAMEA112905161 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905161, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 18.67 g
Average Daily Feed intake: Day 00 - 35 95.06 g
Average Daily Feed intake: Day 07 - 21 64.63 g
Average Daily Feed intake: Day 21 - 35 169.2 g
Average Daily Gain: Day 00 - 07 17.74 g
Average Daily Gain: Day 00 - 35 60.65 g
Average Daily Gain: Day 07 - 21 48.14 g
Average Daily Gain: Day 21 - 35 94.62 g
Average European Performance Efficiency Factor: Day 00 - 07 168.53 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.342 None
Average Feed to Conversion Ratio: Day 07 - 21 1.342 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 39.87 g
Average body weight at day 07 164.03 g
Average body weight at day 21 838.03 g
Average body weight at day 35 2162.7 g
European Performance Efficiency Factor: Day 00 - 35 367.62 None
European Performance Efficiency Factor: Day 07 - 21 358.63 None
European Performance Efficiency Factor: Day 21 - 35 497.99 None
FCR (not corrected): Day 00 - 07 1.052 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.62 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.899 None
Feed to Conversion Ratio: Day 00 - 07 1.052 g/g
Feed to Conversion Ratio: Day 00 - 35 1.567 g/g
Feed to Conversion Ratio: Day 21 - 35 1.788 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=46.88 P1=12.50 P2=34.38 P3=6.25 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=62.50 P1=25.00 P2=12.50 P3=0.00 P4=0.00 %
Litter at Day 07 5.88 pH
Litter at Day 21 7.49 pH
Litter at Day 35 8.02 pH
Mean Abdominal fat Yield 1.42 %
Mean Abdominal fat weight 36.12 g
Mean Breast Yield 16.99 %
Mean Breast weight 435.16 g
Mean CRP at Day 07 1.0536 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1906.2 g
Mean Carcass Yield 75.38 %
Mean HPT at Day 07 1.2488 ng/ml
Mean HPT at Day 21 0.59161 ng/ml
Mean HPT at Day 35 0.64114 ng/ml
Mean LPS at Day 07 3.3958 ng/L
Mean LPS at Day 21 2.9732 ng/L
Mean LPS at Day 35 3.1026 ng/L
Mean Legs Yield 20.93 %
Mean Legs weight 524.46 g
Mean TBARS 0.05 mg MDA/kg
Mean carcass body weight 2528 g
Mean feather cortisol at Day 07 13.745 pg/mg
Mean feather cortisol at Day 21 11.503 pg/mg
Mean feather cortisol at Day 35 12.887 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 5 %
Mortality without culleds: Day 21 - 35 5.88 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 5.88 %
Pen code CA11 None

Sample metadata

Marker Measurement Units
Animal code CA11.12 None
Breed Ross None
C-Reactive protein 0 pg/ml
Chicken body weight 1053.4 g
Feather cortisol 13.16 pg/mg
Haptoglobin 29.15 ng/ml
Lipopolysaccharide 6.87 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None